They say CCTV footage of Mitchell's car in the area where the victim was last seen and at the quarry, cellphone data which also placed him near both scenes and DNA evidence proved that he was the offender.
Mitchell has pleaded not guilty to all charges.
He claims police arrested the wrong man, that he had nothing to do with the attack.
Justice Sally Fitzgerald said the jury must decide the case "fully on evidence before the court" and do so "dispassionately and fairly".
"You have to weigh all the evidence clinically," she said, "and base your decision on the facts as you find them."
Justice Fitzgerald said the jury needed to assess the "weight and worth" of the evidence and apply their collective experience, common sense and knowledge of human nature.
"Ultimately there's not an easy formula I can give you to assist you with the task ahead," she told the jurors.
Justice Fitzgerald said the jurors hadto reach a unanimous verdict on each charge.
She reminded the jury that each verdict was "very important" to the defence and the Crown and they should take as long as they needed to make their decision.
There was no timeframe or deadline, she advised.