The eels would need to travel 10m to 15m to the new ponds.
Eels move on land by bending their bodies into waves, and generally travel at night to use dew to aid their movement.
"I am hoping they will get the message that a much better home is nearby, but if some eels remain as the water dries up, and the sludge remains, we will get contractors to draw nets across the old ponds, capture them and convey them to the new ponds."
Mr Steer said the eel numbers were based on farm-dam estimates.
"It is generally accepted that a farm dam contains 3500 eels per hectare, so with 23ha of sewage ponds we would expect 80,000 eels."
The eels are welcome residents, as they help with "biological processes".
The old ponds are likely to be empty by around May or June next year.