These faults had been brought to management's attention but not rectified. Pike River had also ignored its own safety recommendations regarding the main fan.
Ms Birdsall said the decision to place the fan underground was "rare, if not unique to Pike".
However, as risk assessment controls the company was meant to place the fan in an area of stone so there was no possibility of it sparking a coal gas explosion. In addition, "explosion paths" were to be created around it to divert pressure from the fan and enable it to continue to operate at times of emergency.
Instead, the fan was sited further into the mine in the coal seam and the explosion paths had not been created, leaving it unprotected in the path of the main explosion.
The only escape route available for the miners, up the ventilation shaft, involved an initial 55m vertical climb which most, if not all, would have been incapable of at the best of times.
The only underground fresh air base, 1km away from the furthest workings, relied only on a piece of brattice to protect it from gases.
Some underground machinery that should have been fitted with gas detectors was not, the mine did not have a proper methane drainage method, and recommendations that this be rectified had also been ignored, Ms Birdsall said.
At the end of the evidence, Judge Farish reserved her decision to April 18.
Last August, Judge Farish presided over the prosecution of Pike River contractor VLI, a subsidiary of Sydney-based Valley Longwall International, which had admitted three charges; each carrying a maximum fine of $250,000. Those charges related to its failure to take all practicable steps to protect its employees Josh Ufer, 25, Ben Rockhouse, 21, and Joseph Dunbar, 17.
At the time she was criticised for fining the company just $46,000. The judge entered convictions on two counts and imposed the $46,000 fine on the other after the Crown indicated it was not expecting a financial penalty on all three.
The decision drew sharp criticism from the miners' union and the victims' families, who considered the fine lenient.