Bacteria levels in the Taieri River at Waipiata, a popular bathing spot, continue to be up to three times higher than the national health guidelines, making it unsafe for swimming.
Bacteria levels have exceeded the red action guideline of more than 550 E. coli per 100ml - which indicates the water posed an unacceptable health risk to swimmers - in every Otago Regional Council test this summer has shown.
On December 23, it recorded 1986 E.coli per 100ml after significant rainfall two days earlier, but on December 30 it recorded 770 E.coli per 100ml without rainfall in the previous days.
Last year, the council launched an investigation after unexplained levels of bacteria were recorded three times during last summer's recreational monitoring programme.
The regional council monitors the water quality at popular marine and freshwater bathing sites once a week between December and March.