The move is being planned despite scientists accusing the Government of "massively overreacting" as there is no scientific proof of a link between acrylamide consumption and cancer in humans.
The FSA's advice is based on experiments on mice, rather than any studies showing that acrylamide causes cancer in people.
The new rules are also likely to be hit with a backlash from the catering industry as the British Beer and Pub Association said it would resist attempts by the FSA to become a "chip fat controller".
Andy Bale, General Manager at the White Lion in North London, said: "The welfare of our customers is top priority for us but if customers want their chips well done then they should be allowed this.
"Over consumption of alcohol is seen as one of the biggest threats to health and yet we serve this to customers every day with the caveat that if we think someone's had enough we won't serve them any more."
Restaurants will be offered a guide full of tips on how to reduce acrylamide in food which will also be used by the FSA's enforcement team to gauge whether levels are unacceptably high.
The guide will include colour charts designed to be kept in kitchens to show chefs which shades of yellow and brown are safe for cooked chips and potatoes to match.
It will also advise chefs to buy types of potatoes which are low in starch and blanch chips and potatoes before frying or roasting, and cooking them at a lower heat and for less time.
- This story originally appeared in The Daily Telegraph