"We often receive anecdotal reports that pukeko, hawks, shags and eels are all responsible for taking ducklings. The long-term solution for trying to get hatchlings through this stage may be habitat manipulation, such as planting better cover species or intensive predator control," he said.
"The overriding aim is identify key life stages that are limiting the number of birds in the population. We need this information to better manage our stock and increase our maximum sustainable harvest over time."
Mr Klee and his fellow researchers were in the process of trapping 40 mallard hens in baited "funnel traps" before harnessing transmitters to their bodies.
The $300,000 study will take three years.
Depending on the results, Fish & Game staff hoped to identify "opportunities to improve productivity in any given year through long term habitat manipulation and enhancement", Mr Klee said.
"That translates roughly into 'if we can improve the living conditions for these ducks we'll end up with lots more of them'."