Rigging holes are also being burnt to install specialist protector equipment used during the lift operation.
Diving on this task has been at depths of approximately 46 metres, while other diver preparations have involved cutting down and removing major protruding features such as the large funnel, which will reduce drag and weight once the lift operation starts.
Once cut, the two sections will be lifted onto a second barge to be transported to port where they will be dismantled for scrap and, where possible, recycling.
A team of small craft will be stationed at the reef to collect any debris released during the operation.
The entire operation - a logistical nightmare which has involved a race to pump Marmite-like oil from fuel holds and cranes plucking away containers stacked in high leaning towers - has now reached the point where nothing of the Rena is visible from above the water.
At the last estimate, the cost of the disaster and salvage to the owners had hit $300 million, making it one of the costliest salvage jobs in history.
Meanwhile, the ship's owners still haven't made a call on whether they will seek to leave all or part of the remaining wreck on the reef.
Assessments of the wreck's environmental, social and cultural impacts are due to be complete by the end of the year, and until then the owners say any decision to lodge a consent application won't be made.