The third man tried to run off but he was located. As the man attempted to flee the scene he was injured during the chase.
The 44-year-old is now in a stable condition in hospital and has been charged with manufacturing methamphetamine and possession for supply of methamphetamine.
At the same time, police also searched a New Lynn property and found a sawn-off shotgun, ammunition, more than $300,000 in cash and a small quantity of methamphetamine.
A woman at the address is now assisting police with their inquiries.
Police say there may be further arrests or charges laid that are linked to Operation Coupeville.