The sale follows an unopened copy of Nintendo's The Legend of Zelda selling at auction Friday for $1.24m (USD$870,000).
The auction house said that sale was of a rare version that was created during a limited production run that took place during a few months in late 1987.
"The Legend of Zelda marks the beginning of one of the most important sagas in gaming; its historical significance can't be understated ... it is a true collector's piece," Valarie McLeckie, Heritage's video game specialist, said in a statement.
In April, the auction house sold an unopened copy of Nintendo's Super Mario Bros that was bought in 1986 and forgotten about in a desk drawer for $945,000 (USD$660,000).