The so-called "passive" funds use them to apportion their portfolios directly in line with their index weightings.
A new methodology document will be released to the market by April 10.
The method of calculating indexed shares will change from the existing modified free float methodology to a pure free float methodology.
The "modified" free float method meant that companies like Contact, which has 52 per cent of its shares locked up with majority owner Origin Energy, was treated as if all its shares were trading on the market.
Instead, the NZX has gone for a pure free float, so only the shares not tied up in long-term strategic holdings will be included in its calculations.
The change will be applied to all equity indices, including the NZX 50, NZX 10, NZX Midcap and NZX 50 Portfolio Indices.
"NZX Indices considers such an approach is both simpler than the existing modified free float methodology and is aligned with the indexed share practice for other international indices," the exchange said.
The change will be implemented at the June 2012 index review.
The NZX will launch a new NZX 20 Index on April 23. The index will be a capital-only index with a weighting cap of 15 per cent for any single constituent.
Qualifying overseas and dual-listed stocks will be included on the NZX 20, which will have a starting value of 3000.