Bernardi criticised policies the Government took to the election that affected the ability of Australians to plan for their retirement, insisting it diminished faith and confidence.
"The Government is living out of its means and the community and our children are paying the price," he told reporters.
"I am not prepared to do nothing or maintain the status quo while we rack up billions in debt."
Attorney-General George Brandis led the coalition attack on Bernardi, labelling the defection a betrayal of conservative values. He reminded him that he had been elected by South Australian voters as a Liberal and noted that in the time since then the Government had changed none of its policies.
"If one seeks to restore confidence in the political class, it is a poor way to begin by breaking the promise one makes to one's electors to serve for the political party on whose platform and whose ticket one stood," Brandis told Parliament.
Brandis said the Government expected him to continue supporting government policies given they were what he stood for when elected.
Earlier Turnbull told a meeting of Liberal and Nationals MPs that the honourable course would have been for Bernardi to quit Parliament.
Bernardi cited the toppling of Tony Abbott as Prime Minister in 2015 as a reason for his defection, insisting politics was broken and voters were looking for alternatives outside the major parties.
Abbott, in a none-too-subtle dig at Turnbull, said while "Cory and I have sometimes disagreed, I'm disappointed that more effort has not been made to keep our party united".
Labor said the "extraordinary" defection was a consequence of the Prime Minister's failure of leadership, and showed the Government was bitterly divided.
- AAP