The man, from the Christchurch suburb of Ilam, was remanded in custody until August 19.
But as he was led back into the cells, the family yelled they hoped he would, "Die".
Miss Duckmanton's mother shouted abuse at the man, saying he had taken her daughter and had to be escorted from the court room by victim support workers.
At the accused's first appearance at Christchurch District Court on May 27, the courtroom had to be cleared after her family hurled abuse at him and even lunged at him in the dock.
Police have said they believe Miss Duckmanton's death was related to her work in the sex industry in central Christchurch.
Her body was found burned and dumped on the roadside verge of Main Rakaia Rd, 500m from State Highway 1 on May 15.
Miss Duckmanton's aunt Sue McGrath earlier said the death has "broken my family