Currently, more than 11,000 embryos were stored in the country, which was surplus to the requirements of those undergoing IVF treatment. As a result, many would be discarded for legal reasons, Professor Jones said.
The inability to carry out research on some of those embryos was an ethical inconsistency which failed to protect embryos and made New Zealand dependent on research from other countries, he wrote.
"It can be argued that a society that allows IVF, also has a duty to be involved in ongoing research that will increase the efficacy and safety of the procedures being used."
The destruction of the surplus embryos would occur regardless of whether any research was carried out on them, he said.
"This is an unavoidable situation of loss, including potential benefits for human health from research on early embryological development.
"These are unwanted embryos that have no valuable future. This is because their parents have consented to their use in research, no longer requiring them to produce a child and not wishing to donate them to another couple.
"Hence, their existence 'in vitro' means they have no future as human beings," Professor Jones wrote.
Until there was further clarification, New Zealand fertility specialists and the public would continue to rely on research conducted by others in overseas jurisdictions, he said.