In afternoon trading in New York, the Dow Jones Industrial Average retreated 0.68 per cent, the Standard & Poor's 500 Index dropped 0.66 per cent, and the Nasdaq Composite Index sank 0.86 per cent.
Shares of Boeing and Chevron fell, last down 1.9 per cent and 1.8 per cent respectively, pacing losses in the Dow.
"I think the longer this stalemate goes on in Washington, the greater the reaction is going to be in the market," Warren West, principal at Greentree Brokerage Services in Philadelphia, told Reuters.
Initial claims for state unemployment benefits rose by 1,000 to a seasonally adjusted 308,000 in the week ended September 28, according to the Labor Department.
Separately, the Institute for Supply Management said its services index fell to a lower-than-anticipated 54.4 in September, the lowest in three months.
"We're still seeing positive growth, it's just not suggesting that there's underlying momentum in the pipeline to propel us beyond the 2 per cent growth range," Lindsey Piegza, chief economist at Sterne Agee & Lynch in Chicago, told Bloomberg News. "Businesses are very hesitant to invest in additional employees."
Meanwhile, the Labor Department said it will not release the September payrolls data-which includes the unemployment rate and payroll employment-on Friday as originally scheduled because of the lapse in funding. An alternative release date has not been scheduled, it said in a statement on its website.
Shares of Eli Lilly slumped, last down 3.1 per cent, after the company said it will be "challenging" to meet its minimum revenue goal in 2014 because of the devaluation of the Japanese yen and slower market growth in key emerging market countries.
In Europe, the Stoxx 600 Index finished the session 0.4 per cent weaker from the previous close. Germany's DAX fell 0.4 per cent, while France's CAC 40 slid 0.7 per cent. The UK's FTSE 100 gained 0.2 per cent