KCNA quoted the university president as saying that Kim "makes untiring efforts for the education of the country and the well-being of its people."
North Korea suffers chronic food and power shortages and has not released economic data for decades. South Korea's central bank estimates the North's gross national income, an indicator of the average standard of living, was $1,250 per person in 2011 compared with $23,400 in South Korea.
While Pyongyang has shown new signs of trying to reform its economy in recent years, it has also continued to maintain state control. It says it considers economic development to be a top priority, but on an equal level with its nuclear weapons program, which has brought on years of international sanctions and isolation.
Chan's office said he was not available for further comments Thursday and that other university representatives could not speak about the reaction to the decision.
Many Malaysians who wrote on the university's Facebook page and shared information about the decision criticized it. Nick Lim said it was an "insult to the academia," while Daniel Wong wrote that he was "ashamed to have graduated from this institution."
HELP University, established in 1986, is well-known in Malaysia for business and psychology studies. The initials stand for Higher Education Learning Philosophy.
Chan's statement said the North Korean leader, who took power following the December 2011 death of his father, "has accepted" the conferment of the doctorate.