Officials said earlier on Sunday that two separate pings had been detected.
The black boxes detached from the Airbus A320's tail when the plane plummeted in to the sea on December 28, killing all 162 people on board.
The recorders are key to understanding what caused the aircraft to go down.
So far, searchers have recovered 48 corpses from the crashed plane. Sixteen recovered corpses remain unidentified, partially due to decomposition.
The bodies of most of the victims, who were mainly Indonesian, are widely believed to be in the plane's fuselage, which has not yet been recovered.
The last contact the pilots had with air traffic control, about halfway into their two-hour journey from Indonesia's second-largest city, Surabaya, to Singapore, indicated they were entering stormy weather.
They asked to climb from 32,000ft to 38,000ft to avoid threatening clouds, but were denied permission because of heavy air traffic.
Four minutes later, the plane dropped off the radar. No distress signal was issued.
- AP