A spokesperson for GCHQ confirmed that it would be sending its employees on the certified courses.
"Whilst we will be offering opportunities for GCHQ staff to up-skill through Master's courses that are successfully certified, we also believe they will have much wider applicability across the public and private sector and encourage other organisations to look for the certification as a mark of quality," they said.
"We are always looking for suitable recruits but have no intention of 'monitoring' the courses for them.
"Our main aim here is to increase the future pool of cyber-security professionals that are available to both the public and private sector."
The briefing document says that to gain certification, the Master's degree must offer a "general, broad foundation in cyber security", including a detailed knowledge of internet threats including "common attacks", "malicious code" and "adversarial thinking".
The degrees are part of the Government's national cyber-security strategy, which has the stated aim "for the UK in 2015 to derive huge economic and social value from a vibrant, resilient and secure cyberspace".
GCHQ has already certified two centres for doctoral training in cyber security at the University of Oxford and Royal Holloway. The first group of students started in October 2013 but are not due to gain their PhDs until 2017.
Chris Ensor, deputy director for the National Technical Authority for Information Assurance, the information-security arm of GCHQ, said GCHQ has already sent some employees into schools to help them get pupils interested in maths, but that they could do more.
"We're a highly technical organisation with a highly technical workforce, so we depend on the young talent coming through all the way from schools to apprenticeships, degrees," he said. "If that isn't delivering what we need, then we have to do a lot more. If we get the talent pipeline to deliver what we need... then we all benefit."
- UK Independent