Over this week and next the Department of Defense has registered test sites for GPS jamming near Jacksonville, at Fort Bragg and Charleston Airforce Base.
The testing window began last Friday 16 and finishes on Friday 31, and pilots have been told to report any interference via the FAA the GPS Anomaly Reporting Form.
The FAA warned pilots that they could be affected by the tests between altitudes of 15 and 12,000 metres.
The military technology used to misguide and disorient enemies, can be equally confusing to civilian aircraft. According to USA Today, GPS jammers can cause interference for devices not just ones used for navigation. Quoting the Defense research website SearchSecurity GPS jammers are known to "disrupt all communications within a broad frequency range."
Originally developed by the American military, the Global Positioning System relies on pinpointing a location using a network of satellites.
It was made available to the public in 1983, after the Korean Airline's flight KAL 007 was shot down by accident flying over Soviet airspace.
GPS is now used in many civilian technologies such as phones and personal navigation software, but is now also a vital part of commercial shipping and transport networks.