"Anyone could have jumped (from the Octagon) in the same way," Putin said of Khabib's brain snap.
"If we are attacked from the outside, not only you, we could all jump in such a way … there could be hell to pay. But it's better not to reach that stage."
Khabib's meeting with Putin followed his glorious homecoming, which saw over 10,000 people swarm a football stadium to watch him give a speech after landing in Russia.
It came a day after the lightweight champion walked almost unnoticed through Las Vegas airport on his way to board his flight.
McGregor tried getting inside Khabib's head months before their blockbuster meeting in October, snagging a picture with Putin while attending the World Cup in June.
"Today I was invited to the World Cup final as a guest of Russian President Vladimir Putin," he posted to Instagram.
"This man is one of the greatest leaders of our time and I was honoured to attend such a landmark event alongside him."
The pair are facing a ban from the Octagon after the post-fight scuffle stained what was tipped to be the biggest night in the promotion's history.
McGregor was told by fight doctors to steer clear of any contact until October 28 after being schooled by Khabib.