"It's very un-Australian isn't it?" Jones told Sky Sports Radio.
"Australia has always been a smart country."
"At this stage, that's where we've fallen behind in terms of organisation and planning, and just looking ahead."
Jones said Cheika would have his work cut out for him if he assumed the post.
"He's going to have one of the hardest jobs in the world."
He said the 47-year-old should insist he is supported by staff who understand his vision and style - but shouldn't be given "carte blanche" in running the Wallabies.
"There needs to be some sensible organisation here ... like in any job," Jones said.
The controversy involving Wallabies star Beale had also been bungled, with the decision to schedule a hearing for as late as Friday an "absolute joke" according to Jones.
He said Australian rugby lacked much-needed foresight and wasn't commanding the same local support as the NRL and AFL codes in its current state.
"There's nothing looking ahead for Australian rugby," he said.
-AAP