A 15-second punishment - instead of a usual pit-lane penalty - dropped McLaughlin to 10th, while Van Gisbergen finished 15th.
McLaughlin said he was "peeved off" by Van Gisbergen's aggressive move on the main straight after the safety car disappeared.
"The start was a bit strange," he said. "I've got to look at the rules, because it felt like what Shane pulled out, he was pulling out a little bit early.
"But what happened on the front straight was history ... I made a bad judgement into turn two and copped a penalty. It's my fault."
He brushed off any notion of being served a lesser-than-expected penalty.
"You do the crime, you do the time," he said. "Whatever [officials] decide is the best.
"I'm not going to debate their decision. At the end of the day, what's been done is done and we'll move on tomorrow."
Kiwi Fabian Coulthard took out the event, while Aussie Jamie Whincup survived 14 laps with a dodgy tyre and crumpled chasis to finish third, making up 50 points on McLaughlin in overall standings.