The weed - which flowers late summer and produces a lot of seed - is abundant in the Waikato and Rotorua Lakes.
Gypsywort is a mint-like plant originally from Europe and Asia, up to a metre tall, with square stems, toothed paired leaves and tiny white or pale mauve flowers produced in groups above each pair of leaves in the upper stem.
It has underground runners but despite its mint-like appearance, does not have a minty smell when crushed.
NRC biodiversity manager, Lisa Forester, said it forms dense patches and smothers native water edge plants such as raupo, reeds, sedges and rushes.
The seed can float and survive for more than eight months.
It is spread by water, footwear or contaminated machinery and can be dispersed by ducks after it passes through their digestive system.
Mr Finlayson said the danger of gypsywort being spread through wetlands highlights the need to follow the "Check, Clean, Dry" message.
"This means making sure all equipment used between waterways is thoroughly cleaned and dried for at least 48 hours before using it in the next water body or wetland."