"For example, in many local water systems, roads are designed to be used as a secondary stormwater routes in extreme flooding," co-author Professor Iain White said.
"This is fine in most situations but, in extreme inundation events, wastewater containing sewage may mix with the stormwater overflows, which of course brings problems such as we saw in Edgecumbe."
Prof White, from Waikato University, said the increase in extreme rainfall events would also add stress by overwhelming the networks.
He said drought would bring its own problems, disrupting gravity systems by slowing flow and leading to blocked pipes.
Particularly lengthy droughts could also affect wastewater treatment processes, creating functional and safety concerns.
Prof White said a priority for Deep South Challenge was further research to better understand the risks.
Once that knowledge was available, it would be a case of considering the most appropriate response to help reduce those impacts.
-AAP