Several objected to ferries being excluded from a zonal system, noting that water transport was much more expensive than equivalent bus or rail trips, which did not sit well with the concept of an integrated network also supported by 70 per cent of submitters.
The proposed integrated network involves an increase in frequent bus services running at least every 15 minutes, but fewer overall routes meaning a greater need for passengers to transfer between buses and trains.
In its report, which Auckland Transport has adopted, Mr Lee's panel recommended a zonal fares map be scrapped and called for a full review of potential fare systems before any decisions are made - including the possible addition of ferries to an integrated scheme.
It wanted any new system to ensure the best revenue balance between fares and patronage, and said passenger growth should not be sacrificed to a Government target of recovering 50 per cent of transport costs from users.
Fares are a highly sensitive issue while Auckland Transport is battling to stop patronage from falling on trains and buses, to get it back on target for a doubling of passenger numbers by 2021.
Ferries were the only public transport mode to enjoy patronage growth last month, although Auckland Transport argues rail custom would have grown if March had not lost two business days to Easter.
The organisation will have to wait for new legislation in about June before finalising the transport plan.