Judges Bay remains under a black flag status.
Herne Bay and Home Bay were deemed off limits earlier today but the Safeswim website now lists them as safe.
Last December, more than 20 Auckland beaches became unsafe after a deluge washed sewage, including human faeces, into the sea.
The Safeswim website had black-flagged popular beaches including Mission Bay, Kohimarama, Cheltenham, Milford and Mellons Bay.
Safeswim said at the time the levels of faecal bacteria had breached national guidelines for swimming and posed a high risk to anyone getting in the water.
That incident came three months after a sinkhole opened in Parnell, causing wastewater to overflow into the Waitematā Harbour, closing many of the city’s inner-harbour beaches for weeks.
The 13m-deep hole was caused by a collapsed brick pipe below a private property on St Georges Bay Rd in Parnell that served central and West Auckland.
Auckland Mayor Wayne Brown said decades of underinvestment resulted in the overflow.
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