Thirty other mares that had been in contact with the infected dozen were segregated from the rest and were being monitored for any possible symptoms.
Mr van Halderen would not name the stud farm at the centre of the outbreak for the owner's sake.
"We do that as a matter of a principle."
However, Neil Clarkson, news editor of horsetalk.co.nz, said it was important owners knew who had been in contact with their horses.
"My initial concern would be looking after my horses in terms of being careful who was [given] access to them."
Mr Clarkson said the outbreak was concerning and economically damaging to the industry.
"We would have to be buoyed that the Ministry for Primary Industries indicates that the situation is under control, but at the end of the day the neurological form of EHV1 is a very nasty form of the disease."
Michael Martin, chief executive of the Thoroughbred Breeders' Association, was confident that the outbreak had been dealt with appropriately.
"Everybody in this industry for years has been conscious of quarantining and [knowing] how important animal health is in New Zealand," Mr Martin said.
The stud farm in question will be under quarantine for at least 21 days. However, if a new case is confirmed that will be extended.