Dr Smith acknowledged Maui's dolphins were one of New Zealand's special endemic species and that their numbers were "worryingly low".
He expected to be in a position to announce a finalised threat management plan for the species next month, eight months after submissions closed.
Mr Hughes said the plan was "hugely overdue", and the Government should listen to international scientists.
"The Government isn't giving this species a chance at survival - and I believe they are acting as an accessory to the dolphins' extinction."
Dr Barbara Maas, head of international species conservation for the environmental group NABU International, this week criticised the draft plan in a briefing to the IWC's scientific committee meeting in South Korea, saying it failed in several key areas.
She said the plan did not include range-wide protection among its proposed management options, provide quantitative information on their expected conservation effectiveness, or give a scientific rationale for the chosen options.
"There have been reports on fishing, and sand mining, and seismic testing, but what's missing is for someone to put it all together and state that this is an indefensible and irrational assault on a tiny, remnant population, that is declining quickly and is about to reach the point of no return."