"A mean wind speed of 72 km/h was recorded at the airport between midnight and 5am," she said.
"We also recorded gusts of around 100 km/h so it was well into a gale."
A gust of 105 km/h was also recorded further north in the city.
Bad weather was expected to continue this afternoon, but it would not be as spectacular as yesterday, Ms Walsh said.
"There could be some hail, but it's less likely than yesterday and the chance of a storm is a low.
"By tomorrow afternoon we'll be basically looking at clear skies."
The supermoon had caused a king tide at the start of the week. Although there was not a king tide overnight, the full moon had contributed to the steep swells, she said.
Watch this timelapse of the storm hitting Wellington sent in by reader Mike Ross:
Meanwhile, the council said the zephyrometer sculpture, which was struck by lightning yesterday, would be secured this afternoon so it did not break and fly away if the stormy weather continued.
It could not be taken down until the artist Phil Price, who was out of the country, was contacted.