Auckland Transport issued a warning to bus users, saying there are "major delays" to all North Shore bus services because of the incident.
Lanes over the Harbour Bridge were also closed, causing tailbacks which stretched into the city.
"Police closed off the motorway briefly before they went up on to the gantry and apprehended the male," said Sergeant Sam Wood.
All lanes have since reopened however, police are still advising motorists to find alternate routes to the motorway.
The situation has caused a significant traffic backlog along the Southern, Northern and Northwestern motorways.
Traffic is heavy going north up to Esmonde Road and heavy heading south up to Mt Wellington.