"Whenever you get heavy rain, there's always that chance of flooding.
"It's going to gradually make its way up the country but the only areas [in the North Island] we're keeping an eye on really is around Taranaki and Waitomo possibly, and the Bay of Plenty.
"It's kind of a bit of a heads up, there might be something coming," she said.
Weather Watch head analyst Philip Duncan said it was "one to watch" for Hokitika and Whanganui.
The system definitely had the potential to bring flooding in some localised areas so people should keep up to date with weather watches, he said.
"It's very similar to that same front that came in two weeks ago that did bring flooding to Hokitika and Whanganui.
"The downpours are going to be heavy, the fronts going to be slow-moving, so it's one to watch but we're hoping it'll clear through a little bit faster and that will reduce the chances of any more problems in the North Island."
The downpour was also expected to hit Nelson, Buller and the Tararua Ranges on Friday with thunderstorms possible.
Severe gales could be seen in Marlborough, Wellington and south Wairarapa on Friday.