He said callouts for flat batteries were time-consuming and could pull resources away from urgent rescues.
"When we're assisting someone and we're having to tow them back to their home port because we can't jump-start them it does tie up a rescue vessel that potentially could be needed for a distress call."
Each coastguard vessel costs about $300 an hour to operate.
The most serious weekend callout was for a vessel taking on water in the Firth of Thames on Saturday.
"We got a couple of coastguard rescue vessels over to them and assisted them back to shore safely. On that occasion both vessels were available - it was either luck or good timing."
Mr Winyard urged boaties planning to fish all day to either reduce their electrical usage or start their engine intermittently during the day.
In the past 12 months, Coastguard New Zealand said it responded to 3300 calls for assistance, many of which could have been prevented with more preparation and planning by skippers.
President Colin Small reported last week that standards had slipped, with 10 per cent fewer boaties checking forecasts before going to sea.