Auckland Transport had put on a special timetable with night buses and trains running from Eden Park until shortly past midnight.
Herald journalist Cherie Howie was one of the hundreds queuing for a train after enjoying the game and said the crowds were so big she couldn't get onto the platform.
"It looked like the people (taking the train) west were okay but the people going into the city weren't," she said.
"People are not happy. They've kind of got the attitude of, 'we were encouraged to take the train,' and now people aren't able to get home."
After awhile it was announced to passengers that shuttle buses were going to run fans to Britomart instead, but Howie said the delay meant she risked missing her connecting train into the city.
And, only two buses arrived to take passengers.
"There were people behind me with kids. I don't know what's going to happen to them."
Auckland Transport spokesman Mark Hannan said at 11.30pm that the trains were back up and running after a fault on the line caused them to stop.
"Services are now resuming," he said.
It wasn't the only glitch of the evening.
Earlier travelers tweeted they were delayed en route to the game because of a lack of trains and carriages.