But he warned there is still an increased probability of a bigger event.
He said it is not easy tracking two separate sequences of aftershocks.
"There are so many earthquakes happening right now - ranging from big earthquakes (M6.1 just after 1pm on Saturday) to small ones - and they are overlapping in time. The distance from the network and the overlapping signals from these earthquakes makes it trickier to identify them from one another," he said in a statement.
Kayakers, surfers warned to stay close to shore
Kayakers and surfers are being urged to stay close to the shore in the wake of Friday's earthquakes and the hundreds of aftershocks since then.
Maritime New Zealand's Baz Kirk said anyone in a non-powered vessel should not go more than 200 metres out to sea, just to be on the safe side.
But he said everyone should exercise caution, especially surfers and kayakers who might not hear any warning or alert.
Kirk said boaties should carry waterproof forms of communication.