Three riders were also granted exemption between 2000 and 2003 for a "personal desire not to wear helmet".
NZTA spokesman Andy Knackstedt said the category was a historic anomaly, and would have been issued by the former Land Transport Safety Authority.
There was no record of documentation for the exemptions, and it would not be considered a valid reason today.
Exemptions can also be claimed for religious or non-medical reasons, although only seven have been granted since 2009. NZTA said earlier records for these categories were not available.
Sikh riders are automatically exempt from wearing a helmet as long as they do not exceed 50km/h and can provide proof of their religion to an enforcement officer.
Motorcycle riders can also apply for an exemption from wearing a helmet, although in the past 13 years only 16 motorbike exemptions have been granted.
Reasons cited were: hypersensitive scalps, eczema, heat or sunburn, headaches and/or claustrophobia, deafness and stress.
Applications for exemptions need to be made with supporting documents, usually a letter from a registered medical practitioner.