Robberies and abductions have also risen, 3.4 per cent and 15.4 per cent respectively.
In better news, the number of theft and related offences had dropped with 143,829 victims this year, down from 145,317 in the year ending September 2015.
In November 2014 police started recording crime statistics differently, collating the number of victimisations.
A victimisation is recorded every time a person or organisation is victimised for a given type of crime.
Police Minister Judith Collins responded to the figures, saying police were "working hard in our communities and remain committed to holding offenders to account."
"Burglaries, particularly dwelling burglaries, is a concern and a priority for police," she said.
"This is why an extra focus was put on attending house break-ins from the end of August."
In August police announced they would attend every reported dwelling burglary.
Collins said a review of that new policy would be conducted in December but provisional data show more than 90 per cent of scenes were visited by police in September.
"Across all crime types, police have increased the number of proceedings against offenders - rising by 3,076 to 175,772 over the year."