The council warned the heavy rain, combined with milder temperatures and strong winds, was the perfect recipe for rock falls - especially on the Lindis Pass (State Highway 8), the Crown Range Road linking Queenstown and Wanaka, and through the Kawarau Gorge and between Frankton and Kingston.
A big boulder was spotted on the Crown Range on Friday night before the worst of the rain had come through.
The Coronet Peak skifield has also been closed for the day, including Night Ski, due to high winds and heavy overnight rain. However, The Remarkables remained open.
Shotover Jet also cancelled its operations on Saturday.
The Wakatipu Wanderers versus Star rugby match at the Queenstown Recreation Ground on Saturday has been called off due to the weather