"Fire Service staff are now ceasing their operations and will be handing the scene over to the Port Authority, and normal duties will be resuming shortly on the wharf."
South Port chief executive Mark O'Connor said the fire was in a third party tenant's premises, Wilbur-Ellis, a pet food operation.
"Some ammonia product is used in the freezing process,'' Mr O'Connor said.
Fire communications shift manager Tim Reynolds said the fire was in a commercial building and was "well alight'' when two fire appliances arrived from Bluff about 11.30pm.
The fire fire was about 100m long and 40m wide, he said.
There were no reports of injuries, he said.
A fire investigator from Dunedin is on currently on site.