The trial would monitor the site and assess environmental impacts.
Mr Saidy said the $1.2 million project became possible after receiving $607,173 from the Ministry for the Environment's Freshwater Improvement Fund.
The 10 hectares of pine forest would be harvested from next month.
Manuka and kanuka planting would start next year and further areas of pines might also be replaced with natives.
HDC said it would be the first council in New Zealand to use a purpose-made native ecosystem at an operational scale for irrigating and treating wastewater.
George Mcdonald, chairman of The Pot landowners' Muaupoko Lands Trust, said the land used to be covered in native plants 30 to 40 years ago and the trial was a good move to return the area to how it used to be.
"We're behind it 100 per cent to try and get the area back to its natural state. We gave our support to council to go ahead with the trial to improve water quality in the catchment," he said.
Environmental advocate and Hokio resident Malcolm Hadlum said the trial was a positive move and manuka had good pollutant absorbing qualities. He said The Pot needed ongoing management.