Any more non-permitted flights would result in an abatement notice being issued, it said.
In December, neighbour Allister Saville appealed a council commissioners' decision to give Mr Roberts consent to make up to two flights a day to and from his property.
The appeal is yet to be heard.
Mr Roberts told the Otago Daily Times he did not want to comment while the matter was before the court.
Mr Saville could not be reached for comment, but another party to the appeal, Peter Faul, said Mr Roberts had continued to fly intermittently from his property after previous warnings from the council.
"As recently as yesterday he stated to me he has every intention of carrying on flying.''
The council had been reluctant to enforce those warnings, but he hoped it would do so after the latest court decision, Mr Faul said.
"We've done the legal work for the council.''
Unless the issue can be resolved by mediation next month, Mr Saville's appeal is likely to be heard later this year.
In the meantime, Mr Roberts has applied for consent for up to two flights a day from a temporary helipad on another part of his property, further from neighbouring houses.