He said dogs were attracted to the algae by the deep, earthy odour and there have been cases of dogs dying after consuming the mats.
The algae is normally kept in check by high river flows and colder temperatures but rising water temperatures, longer daylight hours and stable flows allowed the algae to flourish, Dr Olsen said.
He said dog owners should be aware the mats could detach from the bed of the river, flow downstream and fetch up on gravel at the side of the stream or be washed downstream to areas where dogs may come across them.
"The main message for the public is to be aware of what phormidium looks like and to take steps to keep your dog from being at risk of eating it."