Origin Earth director Richard Williams said the 5-year-old company was very pleased to win again.
Now in its 14th year, the NZ Champions of Cheese Awards are held annually by the NZ Specialist Cheese Association, to honour excellence in cheese making.
New Zealand's best cheeses were judged by 34 international and national cheese experts, from more than 370 entries.
Mr Williams said the large number of entries from large dairy companies in this year's awards reflected the influence small producers had on the rising quality of New Zealand cheese.
"The big guys have upped their game," he said.
"This is exactly the same process that put the New Zealand wine industry on the world wine stage when small producers started taking out awards."
The increase in quality was good for the New Zealand cheese industry and small producers should not feel threatened by well-resourced blanket competition, he said.
"There is still a place for single-farm origin high-quality cheeses."
The 21 category winners were announced at a gala dinner at the NZ Champions of Cheese Awards in Auckland this week following a two-day cheese competition.
Master Judge and Australian cheese guru Russell Smith, said Dutch Kiwis had a growing reputation for making "inspirational cheeses" with New Zealand milks.
"The 2017 champions are great examples of this expertise," he said.
"The Smoked Goat Gouda by Meyer Gouda Cheese is an absolutely gorgeous goat cheese, and a pleasure to eat," he said of the Countdown Champion of Champions (Commercial) cheese winner.