Mr Glasner said the cause of increased levels of E.coli in the bay was "unknown and difficult to identify", suggesting DNA tests of samples taken might indicate the source.
He said it could be related to the "poor weather conditions creating a very choppy lake" and pushing bacteria closer to the bay.
He said it was "unlikely" that celebrations at the beach on Christmas Day and New Year's Eve would have caused an increase in bacteria levels in the lake.
Tourists visiting the beach on Sunday raised concerns about the poor "perception" the signs would give visitors about the lake's water quality.
Public Health South has since issued a reminder that those exposed to the contaminated water could develop stomach flu, or gastroenteritis, caused by a variety of organisms that may have been present in the lake.
Dr Marion Poore, Southern DHB medical officer of health, said this was the main health problem resulting from contact with increased levels of E.coli and was most likely to occur between three to 10 days after exposure.
She said symptoms might include diarrhoea, vomiting, abdominal cramps and fever and people could be sick for several days.
"Gastroenteritis can be highly infectious, so maintaining good hand hygiene and staying home while sick really helps to avoid passing illness on to others."
joshua.walton@odt.co.nz