The application said HBRIC anticipated drilling about 31 bores at a depth of up to 80 metres.
"The 15 million [cu m/year] of water taken from the Ruataniwha Aquifer will be used for irrigation purposes (primarily) within the general location of the bores from which the water is taken instead of utilising stored water taken from the Makaroro Dam. This will reduce the amount of infrastructure (and associated costs) that would otherwise be required as part of the RWSS associated with the distribution of water."
Last week, regional councillor Rick Barker asked for reports on the application from council staff and HBRIC, saying he was "intrigued and surprised" to hear about it from outside sources.
Council chief executive Liz Lambert said the application had not been kept secret, and had been discussed openly with the Ruataniwha Water Users Group before and after it was lodged.
Councillor Tom Belford said in a blog the groundwater application was an example of the "failed transparency" associated with the Ruataniwha project.
He described it as "pre-empting all other potential users of additional aquifer water".
HBRIC is due to update councillors on the $275 million Ruataniwha scheme at a council meeting next week.
Councillors voted last month to invest up to $80 million in the scheme provided a number of conditions are met, including that HBRIC secures sufficient funding for the project and signs initial contracts with irrigators prepared to take at least 40 million cum of water a year.