Mr Wright said HBRC was now working with CHBDC to rectify the problem and to provide a timeframe for compliance.
Changes and improvements to the wastewater treatment process would include the installation of new equipment as part of the solution being found, he said.
"In any circumstances where any party is in breach of a resource consent, HBRC has a wide range of enforcement options at its disposal." Penalties ranged from education to prosecution.
"The regional council will treat this breach in the same manner it would any other breach by any other party, there is an established process in place for the council to make such decisions and it has started that process," Mr Wright said.
CHBDC chief executive John Freeman said the council would have a meeting today to discuss potential solutions to the wastewater problems.
Prior to the October 1 change, the CHBDC decided to construct floating wetlands to meet the new treatment standards. The wetlands were constructed in 2013 at Waipawa in July and in Waipukurau in September.
In a CHBDC report last year, the system's problems were outlined and after starting in June 2013, it was found that the five filters sent to New Zealand from Europe had a problem with the sand screws where the sand was washed.