"There were also a few thunderstorms in the east of the region this morning with the station at Waimana reporting over 12mm of rain in one hour and 51mm in the last 24 hours," Law said.
"Looking ahead, we've still got some showers to come across the Bay of Plenty this afternoon some of which will be heavy with possible thunderstorms and hail.
"Although these showers should clear this evening there is more wet weather in the forecast for tomorrow with rain pushing back in from the northeast," Law said.
A heavy rain watch was in place for the far western part of the region and up to the Coromandel tomorrow, from 6pm through to Friday morning.
Bay of Plenty Regional Council engineering manager Mark Townsend said each of the rivers had peaked, with only minor breaking out of the river channels.
"River levels are now falling," Townsend said. "The MetService has advised that more rain is on its way overnight on Thursday. Regional Council staff will continue to carefully monitor the situation."