Read more:
• Heavy rain warning for Rotorua and Bay of Plenty
• How to beat the high humidity sweeping the North Island
The overflow is treated wastewater which has been through full treatment and due to the rain contains a higher than normal amount of rainwater, diluting it further.
Water samples have been taken upstream and downstream of the overflow pipe in the stream but will take a day or so for the results to be received.
Bay of Plenty Regional Council has been notified and the council is also notifying relevant staff at Bay of Plenty District Health Board and Toi Te Ora Public Health.
As a general precaution people are advised to not swim in any waterways after substantial rainfall in case of pollutants, which can be washed into them from a number of sources.
Signs will go up in the Puarenga Stream and Puarenga Bay areas advising people not to swim.
Bay of Plenty Regional Council rain data showed Rotorua had 123mm of rain since Friday.
Rotorua residents can expect more rain during the next 24 hours with a new warning in place.
Heavy rain may cause streams and rivers to rise rapidly and surface flooding and slips are also possible so driving conditions may become hazardous and caution is urged.
The current warning for Bay Of Plenty, including Rotorua, is valid until 8am Tuesday with periods of heavy rain and possible thunderstorms forecast.