"It is has been a lengthy and thorough investigation and it is now up to the Environment Court to decide on the time frames for the next steps," Horizons' strategy and regulation manager Nic Peet said.
Ruapehu Alpine Lifts (RAL) could face a fine of up to $500,000.
Yesterday the company's general manager Dave Mazey didn't know about the prosecution and didn't want to comment until he had looked at the court papers.
In a further development, Horizons is also prosecuting Petroleum Services Ltd, the company that installed the diesel tank and its pumping system.
The spill was also investigated by the Conservation Department and the Ministry of Business, Innovation and Employment.