Principal Chris Grinter said the school was proud its achievements had been recognised.
"Rotorua Boys' High School chose to enter the awards this year to not only celebrate some of the great outcomes enjoyed by our students of late but also to acknowledge all who have supported and contributed to these stories of success."
It had identified a disparity between the achievement of Maori and non-Maori students, with significant changes made to change that.
"It has been a team effort and immensely rewarding to see our students enjoying great success as young Maori men. We are proud to be a winner. Whaia te iti kahurangi."
The awards attracted more than 200 entries.
Ms Parata said with a record number of entries the awards demonstrated the great work being done across New Zealand.
"The winners and all the finalists are a credit to the teaching profession. They showed the difference that great teaching and great leadership backed by strong governance make to kids' lives."
McAuley High School in Auckland was the big winner, taking home the Supreme Award and the award for Excellence in Engaging.