It would be worse - if in removing the entire wreck the reef was damaged even more, it would just add to the problem - and it now seems the marine ecosystem has made a new home in what remains of the wreckage.
This is the opinion of professional diver Joe Te Kowhai, who worked on the Deep Horizon (BP) oil spill in the Gulf of Mexico in 2010.
"The remnants of the wreck have integrated themselves really well into the structure of the reef, because there is a lot of fauna," Mr Te Kowhai has said.
Different iwi are going to have different opinions about what should be done and that is their right. How each of them deals with the latest round of resource consent applications is entirely up to them.
But whoever is in control must make sure they consult with everyone involved and make sure they understand why they are doing it.
Transparency is the key to any decision-making process that affects many different entities.
However, individual hapu and iwi have to make their own decisions. They could get together to form a united front, but it seems that time has passed.