Traffic was diverted through Whakatū while vacuum trucks were used to remove the debris and the road was washed and disinfected before reopening.
Hastings District Council chief executive Nigel Bickle acknowledged the incident should not have happened and apologised to the community.
"This is a serious matter. Our immediate focus has been on responding to the incident."
He said he would be commissioning an independent review next week into the incident to understand how it happened and expected recommendations to ensure similar events could not happen again.
"The report and its findings will be made public."
As a precaution HDC has asked the public to avoid Muddy Creek and the Clive River mouth, including for food collection, until further notice.
The statement said Hawke's Bay Regional Council would carry out its own investigation as the regulator and HDC expected that would result in enforcement action.
HDC had also notified Hawke's Bay District Health Board of the incident.